| Brain |
Barbosa-Morais et al. Science 2012 |
The evolutionary landscape of alternative splicing in vertebrate species |
SRP015997 |
23258890 |
https://www.ncbi.nlm.nih.gov/pubmed/23258890 |
Brain |
| Brain |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Brain |
| Skeletal Muscle |
Barbosa-Morais et al. Science 2012 |
The evolutionary landscape of alternative splicing in vertebrate species |
SRP015997 |
23258890 |
https://www.ncbi.nlm.nih.gov/pubmed/23258890 |
Skeletal Muscle |
| Skeletal Muscle |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Skeletal Muscle |
| Heart |
Barbosa-Morais et al. Science 2012 |
The evolutionary landscape of alternative splicing in vertebrate species |
SRP015997 |
23258890 |
https://www.ncbi.nlm.nih.gov/pubmed/23258890 |
Heart |
| Lung |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Lung |
| Stomach |
Tan et al. Nature 2017 |
Dynamic landscape and regulation of RNA editing in mammals |
SRP039090 |
29022589 |
https://www.ncbi.nlm.nih.gov/pubmed/29022589 |
Stomach |
| Spleen |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Spleen |
| Colon |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Colon |
| Liver |
Ding et al. Mol Cell Proteomics. 2016 |
A Cell-type-resolved Liver Proteome |
SRP033468 |
27562671 |
https://www.ncbi.nlm.nih.gov/pubmed/27562671 |
Liver |
| Liver |
Barbosa-Morais et al. Science 2012 |
The evolutionary landscape of alternative splicing in vertebrate species |
SRP015997 |
23258890 |
https://www.ncbi.nlm.nih.gov/pubmed/23258890 |
Liver |
| Liver |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Liver |
| Kidney |
Barbosa-Morais et al. Science 2012 |
The evolutionary landscape of alternative splicing in vertebrate species |
SRP015997 |
23258890 |
https://www.ncbi.nlm.nih.gov/pubmed/23258890 |
Kidney |
| Kidney |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Kidney |
| Pancreas islet |
Perelis et al. Science 2015 |
Pancreatic β cell enhancers regulate rhythmic transcription of genes controlling insulin secretion |
SRP059509 |
26542580 |
https://www.ncbi.nlm.nih.gov/pubmed/26542580 |
Pancreas islet |
| Mammary gland |
Goel et al. Cancer Cell 2016 |
Overcoming Therapeutic Resistance in HER2-Positive Breast Cancers with CDK4/6 Inhibitors |
SRP060340 |
26977878 |
https://www.ncbi.nlm.nih.gov/pubmed/26977878 |
Mammary gland |
| Ovary |
Kabayama et al. Nucleic Acids Res. 2017 |
Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes |
DRP003418 |
28115634 |
https://www.ncbi.nlm.nih.gov/pubmed/28115634 |
Ovary |
| Testes |
Merkin et al. Science 2012 |
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues |
SRP016501 |
23258891 |
https://www.ncbi.nlm.nih.gov/pubmed/23258891 |
Testes |
| (p2) Rod Photoreceptor |
Kim et al. Dev Cell. 2016 |
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals |
SRP065767 |
27326930 |
https://www.ncbi.nlm.nih.gov/pubmed/27326930 |
Rod Photoreceptor (p2) |
| (p4) Rod Photoreceptor |
Kim et al. Dev Cell. 2016 |
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals |
SRP065767 |
27326930 |
https://www.ncbi.nlm.nih.gov/pubmed/27326930 |
Rod Photoreceptor (p4) |
| (p6) Rod Photoreceptor |
Kim et al. Dev Cell. 2016 |
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals |
SRP065767 |
27326930 |
https://www.ncbi.nlm.nih.gov/pubmed/27326930 |
Rod Photoreceptor (p6) |
| (p10) Rod Photoreceptor |
Kim et al. Dev Cell. 2016 |
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals |
SRP065767 |
27326930 |
https://www.ncbi.nlm.nih.gov/pubmed/27326930 |
Rod Photoreceptor (p10) |
| (p14) Rod Photoreceptor |
Kim et al. Dev Cell. 2016 |
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals |
SRP065767 |
27326930 |
https://www.ncbi.nlm.nih.gov/pubmed/27326930 |
Rod Photoreceptor (p14) |
| (p28) Rod Photoreceptor |
Kim et al. Dev Cell. 2016 |
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals |
SRP065767 |
27326930 |
https://www.ncbi.nlm.nih.gov/pubmed/27326930 |
Rod Photoreceptor (p28) |
| (cortex) SST interneurons |
Yang et al. BMC Genomics 2017 |
Chronic nicotine differentially affects murine transcriptome profiling in isolated cortical interneurons and pyramidal neurons |
SRP096044 |
28219337 |
https://www.ncbi.nlm.nih.gov/pubmed/28219337 |
SST interneurons (cortex) |
| (hippocampus) PV interneurons |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
PV interneurons (hippocampus) |
| Embryonic motor neurons |
Amin et al. Science 2015 |
Loss of motoneuron-specific microRNA-218 causes systemic neuromuscular failure |
SRP066961 |
26680198 |
https://www.ncbi.nlm.nih.gov/pubmed/26680198 |
Motor neurons (Hb9+, embryo) |
| DRG neurons |
Tedeschi et al. Neuron 2016 |
The Calcium Channel Subunit Alpha2delta2 Suppresses Axon Regeneration in the Adult CNS |
SRP055201 |
27720483 |
https://www.ncbi.nlm.nih.gov/pubmed/27720483 |
DRG neurons |
| Olfactory sensory neurons |
Saraiva et al. Sci Rep. 2015 |
Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq |
ERP009139 |
26670777 |
https://www.ncbi.nlm.nih.gov/pubmed/26670777 |
Olfactory sensory neurons (Omp+) |
| Cochlear hair cells |
Cai et al. J Neurosci. 2015 |
Characterization of the transcriptome of nascent hair cells and identification of direct targets of the Atoh1 transcription factor |
SRP053189 |
25855195 |
https://www.ncbi.nlm.nih.gov/pubmed/25855195 |
Hair cells (Atoh1+, cochlea) |
| (cerebellum) Purkinje cells |
Tan et al. Hum Mol Genet. 2016 |
Extensive cryptic splicing upon loss of RBM17 and TDP43 in neurodegeneration models |
SRP071321 |
28007900 |
https://www.ncbi.nlm.nih.gov/pubmed/28007900 |
Purkinje cells (cerebellum) |
| (cortex) Pyramidal neurons |
Yang et al. BMC Genomics 2017 |
Chronic nicotine differentially affects murine transcriptome profiling in isolated cortical interneurons and pyramidal neurons |
SRP096044 |
28219337 |
https://www.ncbi.nlm.nih.gov/pubmed/28219337 |
Pyramidal neurons (Thy1+, cortex) |
| Proximal CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - proximal CA1) |
| Distal CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - distal CA1) |
| Superficial CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - superficial CA1) |
| Dorsal CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - dorsal CA1) |
| Dorsal CA1 → PoS - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - dorsal CA1, postsubiculum-projecting) |
| Intermediate CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - intermediate CA1) |
| Ventral CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - ventral CA1) |
| Ventral CA1 → Amy - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - ventral CA1, amygdala-projecting) |
| Ventral CA1 → NAc - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - ventral CA1, nucleus accumbens-projecting) |
| Deep CA1 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - deep CA1) |
| Dorsal CA3 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - dorsal CA3) |
| Ventral CA3 - Pyramidal |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Pyramidal neurons (hippocampus - ventral CA3) |
| Dorsal DG - Granule |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Granule cells (hippocampus - dorsal DG) |
| Ventral DG - Granule |
Cembrowski et al. Neuron 2016 |
Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons |
SRP056666 |
26777276 |
https://www.ncbi.nlm.nih.gov/pubmed/26777276 |
Granule cells (hippocampus - ventral DG) |
| (cortex) Oligo precursor cells |
Zhang et al. J Neurosci. 2014 |
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex |
SRP033200 |
25186741 |
https://www.ncbi.nlm.nih.gov/pubmed/25186741 |
Oligodendrocyte precursor cells (cortex) |
| (cortex) Newly formed oligos |
Zhang et al. J Neurosci. 2014 |
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex |
SRP033200 |
25186741 |
https://www.ncbi.nlm.nih.gov/pubmed/25186741 |
Newly formed oligodendrocytes (cortex) |
| (cortex) Myelinating oligos |
Zhang et al. J Neurosci. 2014 |
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex |
SRP033200 |
25186741 |
https://www.ncbi.nlm.nih.gov/pubmed/25186741 |
Myelinating oligodendrocytes (cortex) |
| (cortex) Astrocytes |
Zhang et al. J Neurosci. 2014 |
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex |
SRP033200 |
25186741 |
https://www.ncbi.nlm.nih.gov/pubmed/25186741 |
Astrocytes (cortex) |
| (cortex) Microglia |
Zhang et al. J Neurosci. 2014 |
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex |
SRP033200 |
25186741 |
https://www.ncbi.nlm.nih.gov/pubmed/25186741 |
Microglia (cortex) |
| (spinal cord) Microglia |
Denk et al. Cell Rep. 2016 |
Persistent Alterations in Microglial Enhancers in a Model of Chronic Pain |
SRP061355 |
27184839 |
https://www.ncbi.nlm.nih.gov/pubmed/27184839 |
Microglia (spinal cord) |
| (cortex) Endothelial cells |
Zhang et al. J Neurosci. 2014 |
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex |
SRP033200 |
25186741 |
https://www.ncbi.nlm.nih.gov/pubmed/25186741 |
Endothelial cells (cortex) |
| (Pax7+) Muscle stem cells |
Liu et al. Nat Cell Biol. 2017 |
A Twist2-dependent progenitor cell contributes to adult skeletal muscle |
SRP078457 |
28218909 |
https://www.ncbi.nlm.nih.gov/pubmed/28218909 |
Muscle stem cells (Pax7+) |
| (Tw2+) Muscle stem cells |
Liu et al. Nat Cell Biol. 2017 |
A Twist2-dependent progenitor cell contributes to adult skeletal muscle |
SRP078457 |
28218909 |
https://www.ncbi.nlm.nih.gov/pubmed/28218909 |
Muscle stem cells (Tw2+) |
| Quadriceps |
Zygmunt et al. Mol Cell Biol. 2017 |
Deletion of Pofut1 in Mouse Skeletal Myofibers Induces Muscle Aging-Related Phenotypes in cis and in trans |
SRP099194 |
28265002 |
https://www.ncbi.nlm.nih.gov/pubmed/28265002 |
Quadriceps |
| Gastrocnemius |
Liu et al. Elife 2017 |
Loss of adult skeletal muscle stem cells drives age-related neuromuscular junction degeneration |
SRP107891 |
28583253 |
https://www.ncbi.nlm.nih.gov/pubmed/28583253 |
Gastrocnemius |
| (extrasynaptic) Diaphragm |
Liu et al. Elife 2017 |
Loss of adult skeletal muscle stem cells drives age-related neuromuscular junction degeneration |
SRP107891 |
28583253 |
https://www.ncbi.nlm.nih.gov/pubmed/28583253 |
Diaphragm, extrasynaptic |
| (synaptic) Diaphragm |
Liu et al. Elife 2017 |
Loss of adult skeletal muscle stem cells drives age-related neuromuscular junction degeneration |
SRP107891 |
28583253 |
https://www.ncbi.nlm.nih.gov/pubmed/28583253 |
Diaphragm, synaptic |
| (neonatal) Cardiomyocytes |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Cardiomyocytes (neonatal) |
| (adult) Cardiomyocytes |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Cardiomyocytes (adult) |
| (neonatal) Cardiac fibroblasts |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Cardiac fibroblasts (neonatal) |
| (adult) Cardiac fibroblasts |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Cardiac fibroblasts (adult) |
| (e17) Heart ventricle |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Heart ventricle (e17) |
| (p1) Heart ventricle |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Heart ventricle (p1) |
| (p10) Heart ventricle |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Heart ventricle (p10) |
| (p28) Heart ventricle |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Heart ventricle (p28) |
| (p90) Heart ventricle |
Giudice et al. Nat Commun. 2014 |
Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development |
SRP029464 |
24752171 |
https://www.ncbi.nlm.nih.gov/pubmed/24752171 |
Heart ventricle (p90) |
| (marrow) Hematopoietic stem cell |
Manesia et al. Stem Cell Res. 2015 |
Highly proliferative primitive fetal liver hematopoietic stem cells are fueled by oxidative metabolic pathways |
ERP013145 |
26599326 |
https://www.ncbi.nlm.nih.gov/pubmed/26599326 |
Hematopoietic stem cell (bone marrow) |
| (fetal liver) Hematopoietic stem cell |
Manesia et al. Stem Cell Res. 2015 |
Highly proliferative primitive fetal liver hematopoietic stem cells are fueled by oxidative metabolic pathways |
ERP013145 |
26599326 |
https://www.ncbi.nlm.nih.gov/pubmed/26599326 |
Hematopoietic stem cell (fetal liver) |
| (spleen) Dendritic cells |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
Dendritic cells (spleen) |
| (bone marrow) Dendritic cells |
Shalek et al. Nature 2013 |
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells |
SRP015959 |
23685454 |
https://www.ncbi.nlm.nih.gov/pubmed/23685454 |
Dendritic cells (bone marrow) |
| (+IL10, +LPS) Dendritic cells |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Dendritic cells (+IL10, +LPS) |
| Neutrophil |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
Neutrophil |
| (+IL10, +LPS) Neutrophil |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Neutrophil (+IL10, +LPS) |
| Mast cell |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Mast cell |
| (+IL10, +LPS) Mast cell |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Mast cell (+IL10, +LPS) |
| NKT cell |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
NKT cell |
| NK cell |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
NK cell |
| Macrophage |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
Macrophage |
| Eosinophils |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Eosinophils |
| (+LPS) Eosinophils |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Eosinophils (+LPS) |
| Peritoneal exudate cells |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Peritoneal exudate cells, adherent |
| (+IL10, +LPS) Peritoneal exudate |
Hutchins et al. Sci Rep. 2015 |
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses |
SRP038980 |
25765318 |
https://www.ncbi.nlm.nih.gov/pubmed/25765318 |
Peritoneal exudate cells, adherent (+IL10, +LPS) |
| (spleen) B cell |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
B cell, spleen |
| (peritoneal cavity) B cell |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
B cell, peritoneal cavity lavage |
| (+LPS) B cell |
Campos-Sanchez et al. Cell Rep. 2017 |
Wolf-Hirschhorn Syndrome Candidate 1 Is Necessary for Correct Hematopoietic and B Cell Development |
SRP079936 |
28538178 |
https://www.ncbi.nlm.nih.gov/pubmed/28538178 |
B cell (+LPS) |
| (Th17) CD4+ T-cell |
Stubbington et al. Biol Direct. 2015 |
An atlas of mouse CD4(+) T cell transcriptomes |
ERP005852 |
25886751 |
https://www.ncbi.nlm.nih.gov/pubmed/25886751 |
CD4+ T-cell (Th17) |
| (Th1) CD4+ T-cell |
Stubbington et al. Biol Direct. 2015 |
An atlas of mouse CD4(+) T cell transcriptomes |
ERP005852 |
25886751 |
https://www.ncbi.nlm.nih.gov/pubmed/25886751 |
CD4+ T-cell (Th1) |
| (Th2) CD4+ T-cell |
Stubbington et al. Biol Direct. 2015 |
An atlas of mouse CD4(+) T cell transcriptomes |
ERP005852 |
25886751 |
https://www.ncbi.nlm.nih.gov/pubmed/25886751 |
CD4+ T-cell (Th2) |
| CD8+ T-cell |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
CD8+ T-cell |
| CD4+/CD8+ double-pos. T-cell |
Scourzic et al. Leukemia 2016 |
DNMT3A(R882H) mutant and Tet2 inactivation cooperate in the deregulation of DNA methylation control to induce lymphoid malignancies in mice |
ERP013684 |
26876596 |
https://www.ncbi.nlm.nih.gov/pubmed/26876596 |
CD4+/CD8+ double positive T-cell |
| Gamma delta T-cell |
Shay and Kang. Trends Immunol. 2013 |
Immunological Genome Project and systems immunology |
SRP057261 |
23631936 |
https://www.ncbi.nlm.nih.gov/pubmed/23631936 |
Gamma delta T-cell |
| (Rag2-, spleen) Regulatory T-cell |
Thiault et al. Nat Immunol. 2015 |
Peripheral regulatory T lymphocytes recirculating to the thymus suppress the development of their precursors |
SRP056191 |
25939024 |
https://www.ncbi.nlm.nih.gov/pubmed/25939024 |
Regulatory T-cell (Rag2-, spleen) |
| (Rag2+, spleen) Regulatory T-cell |
Thiault et al. Nat Immunol. 2015 |
Peripheral regulatory T lymphocytes recirculating to the thymus suppress the development of their precursors |
SRP056191 |
25939024 |
https://www.ncbi.nlm.nih.gov/pubmed/25939024 |
Regulatory T-cell (Rag2+, spleen) |
| (Rag2-, thymus) Regulatory T-cell |
Thiault et al. Nat Immunol. 2015 |
Peripheral regulatory T lymphocytes recirculating to the thymus suppress the development of their precursors |
SRP056191 |
25939024 |
https://www.ncbi.nlm.nih.gov/pubmed/25939024 |
Regulatory T-cell (Rag2-, thymus) |
| (Rag2+, thymus) Regulatory T-cell |
Thiault et al. Nat Immunol. 2015 |
Peripheral regulatory T lymphocytes recirculating to the thymus suppress the development of their precursors |
SRP056191 |
25939024 |
https://www.ncbi.nlm.nih.gov/pubmed/25939024 |
Regulatory T-cell (Rag2+, thymus) |
| (liver) Hepatocyte |
Ding et al. Mol Cell Proteomics. 2016 |
A Cell-type-resolved Liver Proteome |
SRP033468 |
27562671 |
https://www.ncbi.nlm.nih.gov/pubmed/27562671 |
Hepatocyte (liver) |
| (liver) Sinusoidal endothelial cells |
Ding et al. Mol Cell Proteomics. 2016 |
A Cell-type-resolved Liver Proteome |
SRP033468 |
27562671 |
https://www.ncbi.nlm.nih.gov/pubmed/27562671 |
Liver sinusoidal endothelial cells (liver) |
| (liver) Kupffer cells |
Ding et al. Mol Cell Proteomics. 2016 |
A Cell-type-resolved Liver Proteome |
SRP033468 |
27562671 |
https://www.ncbi.nlm.nih.gov/pubmed/27562671 |
Kupffer cells (liver) |
| (liver) Hepatic stellate cells |
Ding et al. Mol Cell Proteomics. 2016 |
A Cell-type-resolved Liver Proteome |
SRP033468 |
27562671 |
https://www.ncbi.nlm.nih.gov/pubmed/27562671 |
Hepatic stellate cells (liver) |
| (jejunum) Smooth muscle cells |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Smooth muscle cells (jejunum) |
| (colon) Smooth muscle cells |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Smooth muscle cells (colon) |
| (jejunum) Interstitial Cell of Cajal |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Interstitial Cell of Cajal (jejunum) |
| (colon) Interstitial Cell of Cajal |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Interstitial Cell of Cajal (colon) |
| (jejunum) GI PDGFRa+ cells |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Gastrointestinal PDGFRa+ cells (jejunum) |
| (colon) GI PDGFRa+ cells |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Gastrointestinal PDGFRa+ cells (colon) |
| (colon mucosa) GI PDGFRa+ cells |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Gastrointestinal PDGFRa+ cells (colon mucosa) |
| Gut Mucosa |
Lee et al. PLoS One 2015 |
Smooth Muscle Cell Genome Browser: Enabling the Identification of Novel Serum Response Factor Target Genes |
SRP042078 |
26241044 |
https://www.ncbi.nlm.nih.gov/pubmed/26241044 |
Gut Mucosa |
| (adult) Pancreatic alpha cells |
Petrenko et al. Genes Dev. 2017 |
Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression |
SRP100479 |
28275001 |
https://www.ncbi.nlm.nih.gov/pubmed/28275001 |
Pancreatic alpha cells (7-16wks) |
| (adult) Pancreatic beta cells |
Petrenko et al. Genes Dev. 2017 |
Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression |
SRP100479 |
28275001 |
https://www.ncbi.nlm.nih.gov/pubmed/28275001 |
Pancreatic beta cells (7-16wks) |
| (p0) Pancreatic beta cells |
Qiu et al. Cell Metab. 2017 |
Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level |
SRP090506 |
28467935 |
https://www.ncbi.nlm.nih.gov/pubmed/28467935 |
Pancreatic beta cells (p0) |
| (p3) Pancreatic beta cells |
Qiu et al. Cell Metab. 2017 |
Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level |
SRP090506 |
28467935 |
https://www.ncbi.nlm.nih.gov/pubmed/28467935 |
Pancreatic beta cells (p3) |
| (p9) Pancreatic beta cells |
Qiu et al. Cell Metab. 2017 |
Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level |
SRP090506 |
28467935 |
https://www.ncbi.nlm.nih.gov/pubmed/28467935 |
Pancreatic beta cells (p9) |
| (p15) Pancreatic beta cells |
Qiu et al. Cell Metab. 2017 |
Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level |
SRP090506 |
28467935 |
https://www.ncbi.nlm.nih.gov/pubmed/28467935 |
Pancreatic beta cells (p15) |
| (p18) Pancreatic beta cells |
Qiu et al. Cell Metab. 2017 |
Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level |
SRP090506 |
28467935 |
https://www.ncbi.nlm.nih.gov/pubmed/28467935 |
Pancreatic beta cells (p18) |
| (p60) Pancreatic beta cells |
Qiu et al. Cell Metab. 2017 |
Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level |
SRP090506 |
28467935 |
https://www.ncbi.nlm.nih.gov/pubmed/28467935 |
Pancreatic beta cells (p60) |
| (lung) Alveolar type 1 |
Yang et al. Development 2016 |
The development and plasticity of alveolar type 1 cells |
SRP064621 |
26586225 |
https://www.ncbi.nlm.nih.gov/pubmed/26586225 |
Alveolar type 1 (lung) |
| (kidney) Podocytes |
Albert et al. J Mol Cell Biol. 2015 |
The GYF domain protein CD2BP2 is critical for embryogenesis and podocyte function |
SRP034660 |
26082520 |
https://www.ncbi.nlm.nih.gov/pubmed/26082520 |
Podocytes (kidney) |
| Hair follicle |
Turkoz et al. J Invest Dermatol. 2016 |
The Notch Intracellular Domain Has an RBPj-Independent Role during Mouse Hair Follicular Development |
SRP070433 |
26940862 |
https://www.ncbi.nlm.nih.gov/pubmed/26940862 |
Hair follicle |
| Classical brown adipocyte |
Shinoda et al. Nat Med. 2015 |
Genetic and functional characterization of clonally derived adult human brown adipocytes |
ERP005997 |
25774848 |
https://www.ncbi.nlm.nih.gov/pubmed/25774848 |
Classical brown adipocyte |
| Inguinal white adipocyte |
Shinoda et al. Nat Med. 2015 |
Genetic and functional characterization of clonally derived adult human brown adipocytes |
ERP005997 |
25774848 |
https://www.ncbi.nlm.nih.gov/pubmed/25774848 |
Inguinal white adipocyte |
| Rosiglitazone beige adipocyte |
Shinoda et al. Nat Med. 2015 |
Genetic and functional characterization of clonally derived adult human brown adipocytes |
ERP005997 |
25774848 |
https://www.ncbi.nlm.nih.gov/pubmed/25774848 |
Rosiglitazone-treated adipocyte (beige cell) |
| (bone) Mesenchymal cells |
Patenaude and Perreault. J Immunol. 2016 |
Thymic Mesenchymal Cells Have a Distinct Transcriptomic Profile |
SRP063829 |
27183606 |
https://www.ncbi.nlm.nih.gov/pubmed/27183606 |
Mesenchymal cells (bone) |
| (skin) Mesenchymal cells |
Patenaude and Perreault. J Immunol. 2016 |
Thymic Mesenchymal Cells Have a Distinct Transcriptomic Profile |
SRP063829 |
27183606 |
https://www.ncbi.nlm.nih.gov/pubmed/27183606 |
Mesenchymal cells (skin) |
| (thymus) Mesenchymal cells |
Patenaude and Perreault. J Immunol. 2016 |
Thymic Mesenchymal Cells Have a Distinct Transcriptomic Profile |
SRP063829 |
27183606 |
https://www.ncbi.nlm.nih.gov/pubmed/27183606 |
Mesenchymal cells (thymus) |
| (testis) Sertoli cells |
McClelland et al. Biol Reprod. 2015 |
Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells |
SRP053038 |
25855264 |
https://www.ncbi.nlm.nih.gov/pubmed/25855264 |
Sertoli cells (testis) |
| (testis) Leydig cells |
McClelland et al. Biol Reprod. 2015 |
Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells |
SRP053038 |
25855264 |
https://www.ncbi.nlm.nih.gov/pubmed/25855264 |
Leydig cells (testis) |
| (testis) Interstitial cells |
McClelland et al. Biol Reprod. 2015 |
Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells |
SRP053038 |
25855264 |
https://www.ncbi.nlm.nih.gov/pubmed/25855264 |
Interstitial cells (testis) |
| (testis) Spermatogonial stem cells |
Li et al. Oncotarget 2017 |
Systematic identification and comparison of expressed profiles of lncRNAs and circRNAs with associated co-expression and ceRNA networks in mouse germline stem cells |
SRP091381 |
28404936 |
https://www.ncbi.nlm.nih.gov/pubmed/28404936 |
Spermatogonial stem cells (testis) |
| (ovary) Female germline stem cells |
Li et al. Oncotarget 2017 |
Systematic identification and comparison of expressed profiles of lncRNAs and circRNAs with associated co-expression and ceRNA networks in mouse germline stem cells |
SRP091381 |
28404936 |
https://www.ncbi.nlm.nih.gov/pubmed/28404936 |
Female germline stem cells (ovary) |